Scaffold Ga0209138_1062033

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209138_1062033

Scaffold Ga0209138_1062033

Overview

Basic Information
Taxon OID	3300025617 Open in IMG/M
Scaffold ID	Ga0209138_1062033 Open in IMG/M
Source Dataset Name	Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_153SG_22_DNA (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1262
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location
Location Name	Saanich Inlet, British Columbia, Canada
Coordinates	Lat. (^o)	48.6	Long. (^o)	-123.5	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F060899	Metagenome	132	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209138_10620331	F060899	GAGG	MQKAQMSLSKCINAAEMGLTIRETSTLLDIPYRQVLTLSKKYQIKFVCGKRKANERRGKDSFGTSQASAKNYGVNSGQQATLQPKARDRRDKSTDRDSAKRIDDIYSSALPRAEKYELLYAEAWRSFEQKMIDLKLRPAFPEKKRYTPENASNAAIRKQREQSVLRRQMIMSCFTKQQTKVAEDINRETKLGLRITSQMLDLMYRDGVLTRERVQVGPNKRNSVYHYRKK

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