NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0209138_1030010

Scaffold Ga0209138_1030010


Overview

Basic Information
Taxon OID3300025617 Open in IMG/M
Scaffold IDGa0209138_1030010 Open in IMG/M
Source Dataset NameMarine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_153SG_22_DNA (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2235
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location
Location NameSaanich Inlet, British Columbia, Canada
CoordinatesLat. (o)48.6Long. (o)-123.5Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006404Metagenome / Metatranscriptome374Y
F008104Metagenome / Metatranscriptome339Y
F016593Metagenome / Metatranscriptome246Y

Sequences

Protein IDFamilyRBSSequence
Ga0209138_10300103F006404N/AMRGNVYISIPAADKDNALPSAITRYDWTEVAYNDEGEVETTTTIHPTWSQYGEKYKADFGAAVSVSVNDVEFIVYELEVSWLDSEVSALIALGNGQSAPNYTVYTNAEVRQFIAENTAEL
Ga0209138_10300104F016593N/AMKRLKTGVVNTLSFVKLSTFTVNSFDVTLDKVVGNGSLTITNLTDLNDLDSCKDFIQINIDLLSNDLEGGEYELTITNSGESYKYLTEVQDYTVTQTGTGIYGSTVRFTDL
Ga0209138_10300105F008104N/AMGLLSNISEFFASNTYVQATEHSIATNELENSIEDLNGRYKLGHTLVGDYIKFGVNDDFPVILEKMLRQSPVHSGILTKKAKMVVGNDISYSDDFATTNKAKAELKAFVNHCGGNNKGLYEVLTHASFQYEHKGALAFYVRWNKGRTKILEFKSLDPKGVRVAEPNEKGEVTHYIV
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.