NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209138_1007546

Scaffold Ga0209138_1007546


Overview

Basic Information
Taxon OID3300025617 Open in IMG/M
Scaffold IDGa0209138_1007546 Open in IMG/M
Source Dataset NameMarine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_153SG_22_DNA (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6359
Total Scaffold Genes24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (25.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location
Location NameSaanich Inlet, British Columbia, Canada
CoordinatesLat. (o)48.6Long. (o)-123.5Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F065434Metagenome / Metatranscriptome127Y
F087436Metagenome / Metatranscriptome110N

Sequences

Protein IDFamilyRBSSequence
Ga0209138_10075462F065434N/AMKELRWDLTRAQIVWLQKIRNQNWLKLEDSEMINSILYRTDYDEEQKLRLNVLRKTYITYKKAELV
Ga0209138_100754624F087436N/ALPSNPAVAGLLVGLGVLGIIPMIWFSLATTYKRINAFFPNNAGWLLAATFVYSFILEAFNPQNALNALDTPAPTLPNGDYITYLVLAIPSLIWSLYLLFGNSKVKKHIG

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