NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209654_1008770

Scaffold Ga0209654_1008770


Overview

Basic Information
Taxon OID3300025608 Open in IMG/M
Scaffold IDGa0209654_1008770 Open in IMG/M
Source Dataset NameMarine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_161SG_22_DNA (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4633
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (5.26%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location
Location NameSaanich Inlet, British Columbia, Canada
CoordinatesLat. (o)48.6Long. (o)-123.5Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018724Metagenome / Metatranscriptome233Y
F044417Metagenome / Metatranscriptome154Y
F075871Metagenome / Metatranscriptome118Y

Sequences

Protein IDFamilyRBSSequence
Ga0209654_100877014F018724N/AMSQLTKLHELNGRLDMLQDLKISGLGLSLEQQQKLLYTHQQVLNQRFELLKQIKKNYIL
Ga0209654_100877017F044417N/AMTQEAYNKIKKKIARQNQRTQDLMANYVRTTKRVTRITFSRKAQWDHIDTTKVYYSYTRLQA
Ga0209654_10087709F075871N/AMNKLIQQIADQCIEEIDEHIDNTIHWQLTFDDDEGDELTGELELKIKQQILFSLIKRVTK
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