NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209654_1003638

Scaffold Ga0209654_1003638


Overview

Basic Information
Taxon OID3300025608 Open in IMG/M
Scaffold IDGa0209654_1003638 Open in IMG/M
Source Dataset NameMarine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_161SG_22_DNA (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9316
Total Scaffold Genes24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (12.50%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location
Location NameSaanich Inlet, British Columbia, Canada
CoordinatesLat. (o)48.6Long. (o)-123.5Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002321Metagenome / Metatranscriptome571Y
F031424Metagenome / Metatranscriptome182Y
F080527Metagenome / Metatranscriptome115Y

Sequences

Protein IDFamilyRBSSequence
Ga0209654_10036381F031424N/AMAIPKIYKHGIEITKPWSKEMYDYNDKVREYMIKETKFAINSVQDITTANKLAKIINPYGYGEGYDLEDMKTDMLKNAECFENYWLSQIWDELIEADFVIPNFGEGNEVYHIIGFESREEILELRTKFA
Ga0209654_100363814F080527N/AMKKPTVVYYLHYEDALHMERAFNKYKDFAACVMAESSEEAINKTKIIANNPNIKIMGIANGREEWVNEKYPMGTGEEIMPLGGWNRNK
Ga0209654_10036388F002321N/AMKLDLNKEMAWVTFIDEGWQTVWHPVTDVAGNHLEFDDSIMDHCRAQFNNKENWVSFGIAPTSQMMMQNSVRDNL
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