NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209654_1002768

Scaffold Ga0209654_1002768


Overview

Basic Information
Taxon OID3300025608 Open in IMG/M
Scaffold IDGa0209654_1002768 Open in IMG/M
Source Dataset NameMarine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_161SG_22_DNA (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11555
Total Scaffold Genes28 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)27 (96.43%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location
Location NameSaanich Inlet, British Columbia, Canada
CoordinatesLat. (o)48.6Long. (o)-123.5Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F028789Metagenome / Metatranscriptome190Y
F073289Metagenome / Metatranscriptome120N
F088515Metagenome / Metatranscriptome109N

Sequences

Protein IDFamilyRBSSequence
Ga0209654_100276813F028789AGGAGGLTETTCTGNVTLIRENEDGSADYQFNFPPEALEALTRLGILTALQAAIEDAKRLNPEEQD
Ga0209654_100276814F073289AGGAGLDWLCVRTGGIMVKLEIEQYGYCSKTGVCFNPFGIKPEWVQKRAYKIRHGLLIEQTEEAL
Ga0209654_100276824F088515AGGMIEQAQHHIDEATRLIKQAIMTDSLMGLSQAQYVAFLDLWESLYSLDNLIKRYDEDDEELKRHLLLEDDE
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