| Basic Information | |
|---|---|
| Taxon OID | 3300025608 Open in IMG/M |
| Scaffold ID | Ga0209654_1002604 Open in IMG/M |
| Source Dataset Name | Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_161SG_22_DNA (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 12149 |
| Total Scaffold Genes | 26 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (7.69%) |
| Novel Protein Genes | 6 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Associated Families | 6 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Saanich Inlet, British Columbia, Canada | |||||||
| Coordinates | Lat. (o) | 48.6 | Long. (o) | -123.5 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F032285 | Metagenome / Metatranscriptome | 180 | Y |
| F038191 | Metagenome / Metatranscriptome | 166 | Y |
| F045129 | Metagenome / Metatranscriptome | 153 | Y |
| F049660 | Metagenome / Metatranscriptome | 146 | Y |
| F095485 | Metagenome / Metatranscriptome | 105 | Y |
| F103295 | Metagenome / Metatranscriptome | 101 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209654_100260421 | F038191 | N/A | MTEKDLIELDFTRNDEEDGDFHYYTYDIGSFCLISTSNDEVENDEWFVEVFETPEIRFTNPTELSALLTLLKNNSNC |
| Ga0209654_100260426 | F032285 | N/A | MNWESVHISDKIHWLKDVVMNSTNYKDGDELIINALITGSKNTFSGEMGFDIQPHHMKYMRELWNEHIVTQKDNSIILKLREKS |
| Ga0209654_10026045 | F045129 | N/A | MSIEYIDQPYRDKIVEILSTDDSEDKKQSELKLYLLKEEYFKHFYSEPTWLTREIIKDFK |
| Ga0209654_10026046 | F095485 | N/A | MKASDLFKELGLGDSDMESAREWVNYKHFSETVPDVLTLNEYVDTVYKKTVTMDAKPHTWFSERYMSEKYLQSNVSIGSEYISDLEKRIVKILQNGKTYELHIEKFLELCLSVVRKSELALPKEALVYLNEIYKGKH |
| Ga0209654_10026047 | F049660 | N/A | MQRYSGKPRGLINQGGATHQKDRDKLKQNGKNYNSIDFEMSNKITLANYKERSNPIGDLLVGGKRVELTWSECNKIIATLEDAKTSHQRKIQLGLFG |
| Ga0209654_10026048 | F103295 | N/A | MEIDKAKFKRLKKKVLTKYPKASTQRTSDGKYFVSDGVGNELMKEYMIPTQNTVAAAWFWLADVMKVHQNIERTHPKRMDLKSFEAKFARISKRNKK |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |