| Basic Information | |
|---|---|
| Taxon OID | 3300025608 Open in IMG/M |
| Scaffold ID | Ga0209654_1002519 Open in IMG/M |
| Source Dataset Name | Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_161SG_22_DNA (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 12469 |
| Total Scaffold Genes | 23 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 22 (95.65%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Saanich Inlet, British Columbia, Canada | |||||||
| Coordinates | Lat. (o) | 48.6 | Long. (o) | -123.5 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F022786 | Metagenome / Metatranscriptome | 213 | Y |
| F034398 | Metagenome / Metatranscriptome | 175 | N |
| F042639 | Metagenome | 158 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209654_100251920 | F034398 | AGGAG | MIAEEYRNIKPHFVHADHMPMVCRWCCILLDQDTENPPFQPARYFVANVFAETKEQVLDCLGEEYPWCDIMYIDKALGGHTDDDFLESWLHYFDANNTQPLREAPHGTS |
| Ga0209654_10025193 | F022786 | GGAG | MTDLTLDEDKLIALEQAGLLKGRYYIVLEPVESEDEDEDGFAVRAYATKNFKMEDGDESGLDPTYVVLQGLLGALHEHFDDVYDMGLERVTLEALGEVVPEEDLKPEHKERIKSMEGNVIMANFGGLQ |
| Ga0209654_10025196 | F042639 | AGG | MKTADIKKVVELQGRILKLKDRIMKDVAKHNTMVIDELRPMLEDVQYATIYQVGDMTYKRGKIFSQLDCQDYGLSVKADGLATLRRIVVEDKDAPSDDTESGPSASLPE |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |