Scaffold Ga0209654

Basic Information
Taxon OID	3300025608 Open in IMG/M
Scaffold ID	Ga0209654_1000769 Open in IMG/M
Source Dataset Name	Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_161SG_22_DNA (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300025608 Open in IMG/M

Scaffold ID

Ga0209654_1000769 Open in IMG/M

Source Dataset Name

Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_161SG_22_DNA (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	29408
Total Scaffold Genes	12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (50.00%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

29408

Total Scaffold Genes

12 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

6 (50.00%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (50.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location
Location Name	Saanich Inlet, British Columbia, Canada
Coordinates	Lat. (^o)	48.6	Long. (^o)	-123.5	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Saanich Inlet, British Columbia, Canada

Coordinates

Lat. (^o)

48.6

Long. (^o)

-123.5

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F020012	Metagenome / Metatranscriptome	226	Y
F022889	Metagenome / Metatranscriptome	212	Y
F023556	Metagenome / Metatranscriptome	209	N
F076118	Metagenome / Metatranscriptome	118	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209654_100076910	F076118	AGG	MRIDQPSFSGSITQAPSAYAELSGSFTGSYTGSLSGSFIGDITVVEAEFNDLVVKQTINVGTENFDGGVNIINSGSIEVSGSVNLSPNNSFSVDGVDVLDSALAFSIALG
Ga0209654_10007693	F023556	N/A	MNIFTLKNIMKEVNAPNSYEGIPSNKENGDRYEFNHPLYWVFKIENMRIKTLDSRLRDKRKPHARFDVFLSFTGDDSNGEVFVRSEDYNYEQVGNDFYVKLIKANFPTEDRFGNKYTLSAEDDSIFIKGDIEPIN
Ga0209654_10007694	F022889	N/A	MSRPVPNIYVGNSVKKRDRLSFKNFVLEVIEDTFINEFEPTSASLDSDTQTFFTLFLGPTDTSGSIPDIAGYRFTYEDLQVDNAIDYIDVFLYSVKQDSSKYDVELYDGEGNQLTTGQYASGSKEIRLIFKEDITRIPTEVDRTDFIIKGKITEIEE
Ga0209654_10007696	F020012	AGG	MAEEIALNSFKSVLTTLTGDDDIVYKTPTGVSTIVLSAQITNTGNTNTPLTIKMTSNRELPVPQVADIVNSGSFVSASSLIALNQTFIEKESAAYINFQNNLQQIPFSFTSSFFEGYVETAIDGVEADLLEGGTLQSRKAALSYYNKNGEILIPDEYFSASHQAIEYSNKLVQQILINESITGSSEIGRIYNESVTQSFDDTLIAESGSISASVELIQAISETISNPTRVLQAPIDLITNVTIPAGDSLSPIVAGKLVLEQDFSLIMSGSTDLTVILSILESANE

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209654_1000769

Overview

Ecosystem & Geography

Associated Families

Sequences