| Basic Information | |
|---|---|
| Taxon OID | 3300025608 Open in IMG/M |
| Scaffold ID | Ga0209654_1000640 Open in IMG/M |
| Source Dataset Name | Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_161SG_22_DNA (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 32673 |
| Total Scaffold Genes | 51 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 45 (88.24%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Saanich Inlet, British Columbia, Canada | |||||||
| Coordinates | Lat. (o) | 48.6 | Long. (o) | -123.5 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F006699 | Metagenome / Metatranscriptome | 366 | Y |
| F007506 | Metagenome / Metatranscriptome | 350 | Y |
| F011808 | Metagenome / Metatranscriptome | 287 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209654_100064016 | F007506 | AGG | MIAMRFHHVFGLSIETVQAQPVLGWKLDEDINDAQVYFFDGFVINIPFIKIMIGDVFDVF |
| Ga0209654_100064018 | F011808 | GAGG | MKDKTTNLLQRLKLIKDSDPFNKRILNDCFDHFQALQHEIERLQYHNNNLMNVIYQNQSELES |
| Ga0209654_100064047 | F006699 | GGAG | VLKRFDFKCTECNHIEEQWVDSNDKLTTCYECGHTAVRIISPISTKFNGVGWPDADDKWARDHERAARK |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |