NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209654_1000640

Scaffold Ga0209654_1000640


Overview

Basic Information
Taxon OID3300025608 Open in IMG/M
Scaffold IDGa0209654_1000640 Open in IMG/M
Source Dataset NameMarine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_161SG_22_DNA (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)32673
Total Scaffold Genes51 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)45 (88.24%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location
Location NameSaanich Inlet, British Columbia, Canada
CoordinatesLat. (o)48.6Long. (o)-123.5Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006699Metagenome / Metatranscriptome366Y
F007506Metagenome / Metatranscriptome350Y
F011808Metagenome / Metatranscriptome287Y

Sequences

Protein IDFamilyRBSSequence
Ga0209654_100064016F007506AGGMIAMRFHHVFGLSIETVQAQPVLGWKLDEDINDAQVYFFDGFVINIPFIKIMIGDVFDVF
Ga0209654_100064018F011808GAGGMKDKTTNLLQRLKLIKDSDPFNKRILNDCFDHFQALQHEIERLQYHNNNLMNVIYQNQSELES
Ga0209654_100064047F006699GGAGVLKRFDFKCTECNHIEEQWVDSNDKLTTCYECGHTAVRIISPISTKFNGVGWPDADDKWARDHERAARK

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