NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209654_1000536

Scaffold Ga0209654_1000536


Overview

Basic Information
Taxon OID3300025608 Open in IMG/M
Scaffold IDGa0209654_1000536 Open in IMG/M
Source Dataset NameMarine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_161SG_22_DNA (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)36198
Total Scaffold Genes57 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)51 (89.47%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location
Location NameSaanich Inlet, British Columbia, Canada
CoordinatesLat. (o)48.6Long. (o)-123.5Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006699Metagenome / Metatranscriptome366Y
F007506Metagenome / Metatranscriptome350Y
F011808Metagenome / Metatranscriptome287Y
F051563Metagenome144Y

Sequences

Protein IDFamilyRBSSequence
Ga0209654_100053613F007506GGAMVAAKFHNVFGLSVETVQSQPVLGWKQDETIEQADVFFFDGFVINIPFVKIMIGDVFEMY
Ga0209654_100053615F011808AGGAGGMKEEISNLIKRLDIIKDSDPFNRRLLNDCFTILQKSYSEIERLQYHNNNLMNVIYQNQTELENLDAPTGE
Ga0209654_100053627F051563GAGGMPVDPQTGCDDNYDEALKFCIEEIIEEIHRVKELDKLAVESIYYSIFGVDVEVRYQEYLNELKEPS
Ga0209654_100053643F006699GGAGVLKRFDFKCTECNHIEEQWVDSEDKLATCYECGHTAVRIISPIRTHYKGSGWPDADDKWAKDHERAARK
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