NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209654_1000467

Scaffold Ga0209654_1000467


Overview

Basic Information
Taxon OID3300025608 Open in IMG/M
Scaffold IDGa0209654_1000467 Open in IMG/M
Source Dataset NameMarine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_161SG_22_DNA (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)39204
Total Scaffold Genes58 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)52 (89.66%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location
Location NameSaanich Inlet, British Columbia, Canada
CoordinatesLat. (o)48.6Long. (o)-123.5Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007024Metagenome / Metatranscriptome359Y
F009597Metagenome / Metatranscriptome315Y
F053571Metagenome / Metatranscriptome141Y
F064437Metagenome / Metatranscriptome128Y

Sequences

Protein IDFamilyRBSSequence
Ga0209654_100046712F053571GGAMNPTPRETDDESKKAVEEFLAKGGKIQQCEPFARTENLEVKGGFYGRKPKKKEE
Ga0209654_100046713F007024AGAAGMNVSEGDKAVIVFSINPSNVGRIVNVAEYIGKFEKDEQFEAHGMTCTCLVHDHYWWIEAEDLNIQLGPSPKAYIADSWLRKLVDPNKKVTTKAEKELDMFG
Ga0209654_100046751F064437AGGAMNTMNTMDKMKMTPLEISEYKMRWKPGFQVDVHSDLDVQCKAWCRGNLNRWEWSMDTYTDVYSHSFYFEEEQTAAEFTRKFQDWVDKGKG
Ga0209654_100046756F009597GGAGMYAVMVCLDGKDDWIYITKQTDHCWDLQPELFEDAHEAMEFAKTFQLPDKPEMVMVVDYYDE
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