NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208248_1000064

Scaffold Ga0208248_1000064


Overview

Basic Information
Taxon OID3300025595 Open in IMG/M
Scaffold IDGa0208248_1000064 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Crystal Bog, Wisconsin, USA - MA5M (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)43902
Total Scaffold Genes74 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)64 (86.49%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameCrystal Bog, Wisconsin, USA
CoordinatesLat. (o)46.0072Long. (o)-89.6063Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002286Metagenome574Y
F054589Metagenome / Metatranscriptome139Y
F065546Metagenome127Y
F086797Metagenome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0208248_100006433F065546AGGAGMTTLTGNQIDMAQLLTLRAMLKLELKGIPRSRAPTAYSMLKKIGFKGTRGEVLKQLDAARTGILGETI
Ga0208248_100006438F054589AGGAGMKAMDLDHDMQLAAARLMESEGGSFARHIANAYYVADTTNRERLLTAFDDLFCKFYRQYRIDQLTQGESK
Ga0208248_100006450F086797AGGAGMSDSYDDYCVGRALAERYWDDQEARANFRTEVWTTKDKREIAIKDMEDSHLFNAYKHSQDGLLFREMVLRLFEDKLRNITNDE
Ga0208248_100006470F002286N/AMAYSQKIIDLVASSPKTPGNQLGRWAVHLDFPVTKIAYALGVTRQTVYNWFAGKDVFVAYQTRVEFLLKIMSTSPTADVAWRTICKEYNLKP
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