NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208496_1010160

Scaffold Ga0208496_1010160


Overview

Basic Information
Taxon OID3300025591 Open in IMG/M
Scaffold IDGa0208496_1010160 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Crystal Bog, Wisconsin, USA - MA2M (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2727
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (22.22%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameCrystal Bog, Wisconsin, USA
CoordinatesLat. (o)46.0072Long. (o)-89.6063Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016243Metagenome / Metatranscriptome248N
F022593Metagenome / Metatranscriptome213N
F045532Metagenome / Metatranscriptome152N
F089846Metagenome / Metatranscriptome108N

Sequences

Protein IDFamilyRBSSequence
Ga0208496_10101602F016243N/AMSETQITKIVTRLATRPKWSIEARRNKVSQMIAEEIQRSDELNQALMELDILLDKLQKVYQEVDDVCEHLLKYYLKSEYIQMHRPSFPNINTIKDSKAEFTRRLLEVFDNRKSLKAQNSEITTHSIYHKIDPGLRIALNNNIVTLLTIDNELIDLKVMYEFLIENCENE
Ga0208496_10101603F022593N/AMNRQEELKFFRDKIEQIRRHKLANYQEKRNIADILLTEDLDAEYRFSLARNHESLERVDLLLGILEGIGELIIKSKEQEAIQLGI
Ga0208496_10101604F045532AGGMETLELIEFPNPYRKTSFKAYLFWTGISTVANHAIANTITCIFIRTYLAMIVALILLFNKNKSIIHRLMIYLIYLEVNPKIRIIENLNYSVMVIRLGMLSMSLEQIILNPNMEIAHAIILIHLIIVAAYLPNYIDTQEAIAKTISYFI
Ga0208496_10101607F089846N/AMDSNQNIFRNINKAIRAITPGVYNDAQVENLMKIYDVIVAEKEVNPSWQLPSPETRKRKKPKN
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