NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208546_1000394

Scaffold Ga0208546_1000394


Overview

Basic Information
Taxon OID3300025585 Open in IMG/M
Scaffold IDGa0208546_1000394 Open in IMG/M
Source Dataset NameAqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_0.19_D_<0.8_DNA (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)16467
Total Scaffold Genes26 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (53.85%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (50.00%)
Associated Families6

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Delaware Bay
CoordinatesLat. (o)39.283Long. (o)-75.3633Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014726Metagenome / Metatranscriptome260Y
F014837Metagenome / Metatranscriptome259Y
F016141Metagenome / Metatranscriptome249Y
F023295Metagenome / Metatranscriptome210Y
F024095Metagenome / Metatranscriptome207Y
F063343Metagenome129Y

Sequences

Protein IDFamilyRBSSequence
Ga0208546_100039413F063343N/AMNYLILLGILGLFAIGSKSSVGWVQSIKETLLKIMVPGADRRLFSGFTQATFSWIRNPASWVRVFNWTGYAAGINGLGGVGGGTLITRRHVLFANHVPYPARPFDIFFVNADSRTFTYKVVNVQQVGDTDIAIGTLDRDADATLTVYKVLPDNWTQYAKAKTESFSAMGVTGTATSVSLPVLYSNQDRKVSTADLINVRAGVADLGIPAFEVARSFGDPIRGGDSGNPIFVPVGNELVLLGGFKQLGTGGVIASFPWLIDYRGAIENIIGQKLQVVDLGRYA
Ga0208546_100039414F023295AGGAGMLLSMLQGLGCQTRVILVPDGQPVMLAEPVKARIYAFDSTGKLVPSSNKVVLPAGWYALPRK
Ga0208546_100039419F014837N/AMIQRNINPKPRFVTLTSGPSTGALVGVPLATLYRAAFFRFPQDSIVHYVMVNSTLTANGALSQGIGSIAYGQGDQAIGDSLNPGADNFTDNVIWRDELLNPIAGVISEGKSTQIIMNEFFVHTGTGFGIYVNGTNASVNINATIAFNPIAEWVNFREPTVGVRI
Ga0208546_100039420F024095GGCGGMDNTNSLPFVYVVTASLGAAVGATVSTTLIMQADSRFELMGIMGTGGTAATTEDSLQYPNSFTVSIRDQTTGRDLMSAPVPQRVLCGNAFKQFLEKRGIIFEPQSNLLFTFTNLTAATNSITLALHGYKIII
Ga0208546_100039421F016141AGGAMTPEIIDSLQKRFGSSDFSRYQVVRGQKYDFVRLQAAGTSSVSFFSNPIGAVDPGSGAAGIFKTLEQTNLVKNASFGQEYFALTQIRCYANFVPQARQGFTPGSNFAFRGYTALADSAMENLQSVLNTGVLEIKFAQKLYYQIARPFVQCPPGFGIDVQSLGSSRTGNAAETQVSDTNWLVRPDYRGSSVYNIDPIQIIEPEIQIQAAINFPTGNTPSFTGVTLTTANDAAGLSTGVELGLIFDGYVIRPSQ
Ga0208546_100039422F014726N/AMGFQSESIISAASQKFGVIDYSRWQAIRWQWYSYVTYPTAGASELNFFGQVAGQAGVTLQDTNLPKAGSFGQTHFQLKSISTDIQLANNNLDGFTLANGVANTIDTFALASDFLNGFVQAGVLEFSVGARPFATIPKPFMYAPPPGNPVDYDNSYANQIGAVPTAGNPQVVGLPWVTQTKRRDNVYFVDPNILIEAEQQFAVKLSFPSGAVPVIANALVNNTTNPLKVGVVFDGLLLRPV
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