NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209304_1000902

Scaffold Ga0209304_1000902


Overview

Basic Information
Taxon OID3300025577 Open in IMG/M
Scaffold IDGa0209304_1000902 Open in IMG/M
Source Dataset NamePelagic marine microbial communities from North Sea - COGITO_mtgs_100423 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)19352
Total Scaffold Genes24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (33.33%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameGermany:Helgoland, sampling site Kabeltonne, North Sea
CoordinatesLat. (o)54.1883Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006404Metagenome / Metatranscriptome374Y
F010393Metagenome / Metatranscriptome304N
F017728Metagenome / Metatranscriptome239Y
F018620Metagenome / Metatranscriptome234Y

Sequences

Protein IDFamilyRBSSequence
Ga0209304_100090213F010393GGAMGTTAERMMSARSSRGGNTGGAFIGFDERDIKKEFERAFKELENLHDGVTTAQIRRIARKSLKPMVKAYKEEAKAKSKRDFVVYRNGGIYAEIKPGTLAKSMGIITTKVNRGSTFASLQVGPRVKRSFSDPEKGGWFAHFLEYGYLQDGGYKSGIQGFASRARMKNSSGVGNEFKRLMRSFLNKKVKAARV
Ga0209304_100090222F006404N/AMRGNVYISIPAADKDNALPSAITRYDWTEVAYNEEGEVESTTTIHPTWSQYGEKYKADFGAAVSVNVNDVEFIVYELEASWQDSETSALVALGSGLSAPNYTLMTASEARSFIAENSDVQ
Ga0209304_10009025F018620AGGAMMKLDDARELGLMLFENGFTPWMAETGDGYVVRVLINGEIINVFRTDVESVGGN
Ga0209304_10009026F017728N/AMFHTTTTNVSVNYTIMQPVDDVEIGDIIEMSRTGKEFLVESVSPSGIVLKECTRYVSFSRAALNERLKRNVAIHKPI
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