NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208717_1000075

Scaffold Ga0208717_1000075


Overview

Basic Information
Taxon OID3300025574 Open in IMG/M
Scaffold IDGa0208717_1000075 Open in IMG/M
Source Dataset NameArctic peat soil from Barrow, Alaska - NGEE Surface sample F53-3 shallow (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)62751
Total Scaffold Genes107 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)89 (83.18%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil → Arctic Peat Soil Microbial Communities From The Barrow Environmental Observatory Site, Barrow, Alaska, Usa

Source Dataset Sampling Location
Location NameBarrow Environmental Observatory site, Barrow, Alaska
CoordinatesLat. (o)71.2999Long. (o)-156.61Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015001Metagenome / Metatranscriptome258Y
F091014Metagenome / Metatranscriptome108Y

Sequences

Protein IDFamilyRBSSequence
Ga0208717_1000075101F015001GGAGMRSSVLLLIASLAGVLGGAALIGLPALGGAVIFDSLALGVYALLHDDGTGAQPAVHEVPTVASVLERARRAA
Ga0208717_100007561F091014GGCGGVIGRRVQSLAEIERPGDYFGPAKGWTGDLPAVFFLKPNARDEGVPPRARSVQHVCFPPHTYRECPDGSLEIRNSISNLMAGDTTGASDDGWHGYLDEGHVWRQV

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