NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208303_1004746

Scaffold Ga0208303_1004746


Overview

Basic Information
Taxon OID3300025543 Open in IMG/M
Scaffold IDGa0208303_1004746 Open in IMG/M
Source Dataset NameFreshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_2 Viral MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4729
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (11.11%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Chesapeake Bay
CoordinatesLat. (o)37.1Long. (o)-76.0972Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000751Metagenome / Metatranscriptome907Y
F014160Metagenome / Metatranscriptome265N
F025069Metagenome / Metatranscriptome203N
F025529Metagenome / Metatranscriptome201N

Sequences

Protein IDFamilyRBSSequence
Ga0208303_10047461F014160N/AIMKTLKDSMQELAAPIIEWESDHDNEVLQQDFVEAQLGEYGIEFSIYASRDISISHGTHFETQDVTVGDAHFDIEILAVFDQDYDDIDITDEENEMIINVIANFYE
Ga0208303_10047464F025529N/AMQGSKEYFLRVKEAEYFELPQALRERSVVYYNDYELYKDDPSFKALNKAYRDAKKALENWKYDQRHK
Ga0208303_10047467F025069N/AMYRIIADYITLGIWGMSMANTITSFDIANASSVAQLVLSILGIVYLGVKIVNESLNGQINREGKRLENERANRDLIDEENEKL
Ga0208303_10047468F000751N/AMNIYKTNFPTEQEGKDYLLSIGVLVETDNEIVFAKDTAAVVYIGKVVKIPATYDKDGNIITPAVFYPGYAIDVMNAKPDLDFGAFMVYPIEAAHSFYGYARNAEVPPVKKK
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