NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208587_1001213

Scaffold Ga0208587_1001213


Overview

Basic Information
Taxon OID3300025484 Open in IMG/M
Scaffold IDGa0208587_1001213 Open in IMG/M
Source Dataset NameArctic peat soil from Barrow, Alaska - NGEE Surface sample 210 deep-092012 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)13763
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (73.68%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil → Arctic Peat Soil Microbial Communities From The Barrow Environmental Observatory Site, Barrow, Alaska, Usa

Source Dataset Sampling Location
Location NameBarrow Environmental Observatory site, Barrow, Alaska
CoordinatesLat. (o)71.2999Long. (o)-156.61Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F023003Metagenome212N
F025185Metagenome203Y
F079371Metagenome116Y

Sequences

Protein IDFamilyRBSSequence
Ga0208587_100121316F023003AGGAGMAKNQTHKIDADDVVDDVPDRADMGPFADTLVDRGRAVLDQFPTVADSARDALAGAQDQVNGLSDMGIVAASGFALGVSSGLLLAGAPRAILILSMIPVALTLRSAFARGMRPARLLN
Ga0208587_100121317F025185AGGAGGMHIEQLPSVGEVVSALEAQGQRLSDADLVGASRSALTSARDALPDGWTHRRRASRWPWVACAILGTTILGLVFLTPAFRRWAASRRASGRPDGVMGDATQAPAMSAADEMGDLAYPAESDALDTAPLLDGGADN
Ga0208587_100121318F079371GGAMPPVTRLARLVRIVTLPETRGVIVAAAHSETLRDIRQRAVHDRAALVRDLRNPANARDLVRSAARHPAARELASAGLMFLPLRYLPVGWAATWVAHRVVRRHLDPPAAVLDASAFGARRPLKNVTPAGPNV
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