NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208744_1019756

Scaffold Ga0208744_1019756


Overview

Basic Information
Taxon OID3300025450 Open in IMG/M
Scaffold IDGa0208744_1019756 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH24Aug09 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1437
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameCrystal Bog, Wisconsin, USA
CoordinatesLat. (o)46.0072Long. (o)-89.6063Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F057882Metagenome / Metatranscriptome135N
F073069Metagenome / Metatranscriptome120N

Sequences

Protein IDFamilyRBSSequence
Ga0208744_10197562F057882GGAMSCGNNLKEFDHPEYGILDPSQVRELRDELTRCFVDYIGGLSKHLREREAVDIEEDRVTKSHYLKVCATIQNLNKIDPGWCLRYVAPDDECLKIKLHDCKCCYHTCQELSRVVQSPKSNSNKSSQTEDRELTQE
Ga0208744_10197564F073069N/AIKKRPNLPYGERKTEITKSLFVERTNKEVKQLKFKTALYLTELERGDEEVKEISNYIITHYLDEKSNTTSKDSEIKNINIFQEKLKKITNSITKITKEKVEVANKQLNKDMSKETRSILKENFILMYEINIRLVDLKLMYEYIITKMISAEITEGMLTEARKRKWTRFY
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