NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208876_1013548

Scaffold Ga0208876_1013548


Overview

Basic Information
Taxon OID3300025402 Open in IMG/M
Scaffold IDGa0208876_1013548 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH03Jun09 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1447
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameCrystal Bog, Wisconsin, USA
CoordinatesLat. (o)46.0072Long. (o)-89.6063Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F064337Metagenome128N
F079519Metagenome115N

Sequences

Protein IDFamilyRBSSequence
Ga0208876_10135484F079519AGGMKSDKKNISQDSLENLLIVLMNCKDEDGLLLNINPANAFQDWLIDMYPESMRQHWFNLHTYVKEQEK
Ga0208876_10135485F064337N/AGTREMSLIEMREDLCTQKRVSRSRVTYDINYDQEVIYTQEGWSDGQNTVWDNEIGIVLVDALSKHKKAQEK

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