NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208251_1004343

Scaffold Ga0208251_1004343


Overview

Basic Information
Taxon OID3300025398 Open in IMG/M
Scaffold IDGa0208251_1004343 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE15Jun09 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3145
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameCrystal Bog, Wisconsin, USA
CoordinatesLat. (o)46.0072Long. (o)-89.6063Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000934Metagenome / Metatranscriptome828Y
F002085Metagenome / Metatranscriptome595Y
F068572Metagenome / Metatranscriptome124Y

Sequences

Protein IDFamilyRBSSequence
Ga0208251_10043431F068572N/ALSSSMGNQAQIVYNGPYIANMSAIDTQSSVQFLAKNKTAVWAANQSAQQSLPATR
Ga0208251_10043432F000934GAGMATINQILAIAEQVTINDQKFVGQVISRNQRISTSEILTVQPFAFEMKPMNYLLYSQNRSLLSALRVADRATEQYLNFGTTGWLNYIAYQGNLTPTQISDAQWQTSSANKNLVLGNFDSGISSTAYVVRTGDFCQVGRYAYIATADVLRGSGSTVTIPVHRNLITALVSPVNAVIGQYGTTVSLGGSTFTGITFPIILQQYPTYTLIPMTNDSFIAWTSTFKAFEAVL
Ga0208251_10043433F002085AGCAGMNNITPVQNTDNIRMADFVRVTTPSATYRFATTPYVITVPAVDSQPFDALGTLVSIGDAQRDIKSTANQTSITLVGLDTALLGWVLSQQGKGSMIEMWHGFFNPDGTLITSGGTGGLYKFFTGYISNYQIGEQWNETTRSYIGTITAIAANTQTILANRESGRYTNDNSWQYYNPGDTSMNRIAFIQTINYAFGSTTQNNTQ
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