NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208251_1000216

Scaffold Ga0208251_1000216


Overview

Basic Information
Taxon OID3300025398 Open in IMG/M
Scaffold IDGa0208251_1000216 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE15Jun09 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)17815
Total Scaffold Genes33 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)21 (63.64%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameCrystal Bog, Wisconsin, USA
CoordinatesLat. (o)46.0072Long. (o)-89.6063Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F029972Metagenome186Y
F102399Metagenome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0208251_100021630F029972GGAVKMGKFQQKFSQRQERELEEQWPLAKRTIGSGAKWEKADLQTQEHQNIEFMIECKSTQSSSFSITKTIWNTVKNHSQNKSWLSRPVLAVRLYGPTIEMTEWGERENTPETLPVELDLIVMDKDDFLELYEDYLRLKEKE
Ga0208251_100021632F102399GGAMGFLDRTLASYQNNEPITPHIEEALIHAEWPEEYPVKVFNKERLFDNMYHPSSDVSAGELQLYYKFHPELRLQCQEERISPTLQMTFQVGSAFHSIIQSMLIHLGLTSLDKVEVKFKNEERMVAGAVDILELTTPDGESFLVDIKSCNQLPKEASYQYSMQLRTYQDNCPGAPDRMALLFIQKSYPHKIKTIEVFKDQNELDKLYDKWSRVRVAIGKNDNSELKHCCNGPTDEVFLSCPARKICSYWN
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