| Basic Information | |
|---|---|
| Taxon OID | 3300025393 Open in IMG/M |
| Scaffold ID | Ga0208041_1002183 Open in IMG/M |
| Source Dataset Name | Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from China - AD_SCU002_MetaG (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 10786 |
| Total Scaffold Genes | 15 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 12 (80.00%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | China: Chengdu, Sichuan | |||||||
| Coordinates | Lat. (o) | 30.66 | Long. (o) | 104.06 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F036251 | Metagenome / Metatranscriptome | 170 | Y |
| F040648 | Metagenome / Metatranscriptome | 161 | Y |
| F054066 | Metagenome / Metatranscriptome | 140 | N |
| F101228 | Metagenome / Metatranscriptome | 102 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0208041_10021831 | F036251 | AGG | MSAKERQSVLFGDTGVVAPIDTTERVSLTDGTVFVAQRIEVRPSSKYGEYVVIDGEDLDGKDFHAYSTSSVILQQAKALLEKYGGENGALTHDVLCAVKSVVSETTGRRFYTLV |
| Ga0208041_10021832 | F040648 | GAG | MAENVINHDEVRLEIDPLLDTAREGVAALEKASSLIHIPIREMAKIQTAIKKMREAALYIENRAYNIPVKSHGTTKSVLKEALKGATQEQIERAYAILSGQDASYETAEGGAMAEDAYYEVPEEGDEE |
| Ga0208041_10021836 | F101228 | GAGG | MEEIYLNTNRVRDLWLWVAERWAYFALMFSASILIYYATGNAMQAVYGLILYMVMWLGILWVNQLPHDERVWWKRVVGITIIVLAVTVAITYSPVSALTITGAPDGDQIHWEIADGEPPYTVFVNGIEIVSGYPGTVISTDADPGKQYTAVVMDNESVADATVTGEYYTYPLWVWMLFATLVACLIISIWLPYAAFGAAIAGGFLLLLIAPNPDYAAYLRIFAGAAFIVGLAGLAGRMQS |
| Ga0208041_10021838 | F054066 | AGG | MFGTTRKPKELNRFRVGKGSPALKAALYRMTNKSYLDIRIYRGYREVTRIVTPDTGMRRFVVDGVGAFVMPNEEQMLRQLHDRHALYIPYNINSSAPGEVTDNLEPVAFVYPPLSPAEFQAELEAQTVADLLAETEKDMSWIWLLAGGAVLIFVLILLFGGA |
| ⦗Top⦘ |
 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |