NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208871_1003524

Scaffold Ga0208871_1003524


Overview

Basic Information
Taxon OID3300025381 Open in IMG/M
Scaffold IDGa0208871_1003524 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE19Jun07 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3219
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameCrystal Bog, Wisconsin, USA
CoordinatesLat. (o)46.0072Long. (o)-89.6063Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F044873Metagenome153Y
F079523Metagenome115Y

Sequences

Protein IDFamilyRBSSequence
Ga0208871_10035244F044873N/AMIIDKEVITLADIDEAIAHLSEMMKDKYRNRLTHQRKAFLMSELDSLLDARLEAISELGNSSDREPKSRP
Ga0208871_10035245F079523GAGGMVEELWTSKQVIEHLEIEINNLRQLQFRKTLAWVKKEGKSVFYFADDVRAYKLKREARKTVK

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