NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208254_1001009

Scaffold Ga0208254_1001009


Overview

Basic Information
Taxon OID3300025355 Open in IMG/M
Scaffold IDGa0208254_1001009 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE02Jul07 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2366
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (28.57%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameCrystal Bog, Wisconsin, USA
CoordinatesLat. (o)46.0072Long. (o)-89.6063Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F041008Metagenome / Metatranscriptome160N
F054566Metagenome / Metatranscriptome139N
F062460Metagenome / Metatranscriptome130N
F069678Metagenome / Metatranscriptome123N

Sequences

Protein IDFamilyRBSSequence
Ga0208254_10010091F041008N/AMPIKNEAEMARTLNKLIIVDIEEGYRVPVRRKRQEISDMLAENRYNDPEVWQALMDYDILLGELLQRYEEVENVMEHLFEYYLTSEYSQKLRIPLKGAKPVINDRLHFQNKLEEVLEQRSSVEKNKSVIALHSVTHTIERELRIVGDHN
Ga0208254_10010092F054566AGGMEEEKNKAELTLDKLRLLRVKNTQEKQAISYIILEEDIEPILRQSLVCNVRLLETIDHLLGLLEGIGTIITKEKLIKVKQTNKDAN
Ga0208254_10010096F062460N/AMNLEKSIIEAVTTAVREIRQESCIEKQVKSLMKIYDAIVVKDNETSTESSLKTTRKRKRSISHE
Ga0208254_10010097F069678N/AELIYKLKLCIDEINTEVDEVTYENIWSYEKMNRILANLRKLDPNWTIDGGFDKPGMWDLTDMLEGILKHRIIDIEIDDQDIENLDLESYNEFHKALIDMRKRDPGWSINGTRRNLSKPIKCRNIGLPTNSSESESENEHLDDKINNGTAHTDR
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