| Basic Information | |
|---|---|
| Taxon OID | 3300025353 Open in IMG/M |
| Scaffold ID | Ga0208255_100475 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH06Jun08 (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 5237 |
| Total Scaffold Genes | 14 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 12 (85.71%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (100.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Crystal Bog, Wisconsin, USA | |||||||
| Coordinates | Lat. (o) | 46.0072 | Long. (o) | -89.6063 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F015062 | Metagenome | 257 | Y |
| F016247 | Metagenome | 248 | Y |
| F036080 | Metagenome / Metatranscriptome | 170 | Y |
| F037052 | Metagenome | 168 | Y |
| F053035 | Metagenome / Metatranscriptome | 141 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0208255_10047512 | F016247 | AGGA | MSHFIVEHRYKGNYVMETLSGVEDIDTSCYENLLGIWVCDSQAELQIMEKELREMRHAKRSS |
| Ga0208255_10047513 | F015062 | AGAAG | MTKSKIKAVTPRLSDEDPDPLEQDELENTTAQLADGWFPWDQEDINDIRNLINDSMPRKQRAIFVAFLNGQGYNDLGVTEKYWRYHFDKGVEFIKKEFGL |
| Ga0208255_1004752 | F037052 | AGGTGG | VAAKKPVSKYVFVPSMCDRMIEMGKEGASQKMMFSELGINKDVAATWKKNHPDFADALSTAVTHSQAYWEREILANVNNKGFNSRLAEIALRGQFQEDYRETRDTKVDAKVEVVVDFNKEIANLISALKE |
| Ga0208255_1004755 | F053035 | AGGAG | MNPFELRFSVFNTAKDLMVKQHEANMSAWEVLNKTSKEATELAPKFPTMEEIIDKAIEINSFVSGNTTKELVNLAKKMTGVSVIF |
| Ga0208255_1004758 | F036080 | GAG | MSDRYDLEQAIMVAWQTADDIDLLYKHHGDHPVPMSEDDVANALWGIKVLHDMRMEKLMDTYCRKFELDQYCTDPVKLAARKQMFPDFPVKQKKGKK |
| ⦗Top⦘ |
 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |