NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208255_100121

Scaffold Ga0208255_100121


Overview

Basic Information
Taxon OID3300025353 Open in IMG/M
Scaffold IDGa0208255_100121 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH06Jun08 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10925
Total Scaffold Genes24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (62.50%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameCrystal Bog, Wisconsin, USA
CoordinatesLat. (o)46.0072Long. (o)-89.6063Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007166Metagenome / Metatranscriptome356Y
F010592Metagenome301Y
F068376Metagenome124N
F078045Metagenome116N

Sequences

Protein IDFamilyRBSSequence
Ga0208255_10012110F010592N/AMSTYKPFSQDLHDVYDAPARQAVSTWMQMKKGYEVRENPNRYGVDLICFRSGSPVGALEVEVRQLGFDQHRSIHVAQRKEKLFQEGLPTLFFALTQDLSRAYYLKADLIKDCPLVEVHNRYVGKGEMFYDVPITMFKIANLTDVF
Ga0208255_10012111F078045AGGMSYEHFVNNYQRWLKSPRTLSEAIKDAEYATSITRPEDGEYSLFWGLLGALLFVAIFGYGFWRYVNL
Ga0208255_10012123F007166GGAMDELYQVMTEMEQRLELALDNMEYGTELSQDDVDVIRAACGKPNNTRNNLLQSVFEDFGNVFGGNHAK
Ga0208255_1001219F068376GGAGMTNFKIEGKEHKSPKGHYVKESPHKMEDEIHRLAKKLDKHIALPMEKAHHAESSQKEAPLPSMRKY
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