NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208619_100697

Scaffold Ga0208619_100697


Overview

Basic Information
Taxon OID3300025336 Open in IMG/M
Scaffold IDGa0208619_100697 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE10Jul07 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2213
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (71.43%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameCrystal Bog, Wisconsin, USA
CoordinatesLat. (o)46.0072Long. (o)-89.6063Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005167Metagenome / Metatranscriptome410Y
F019092Metagenome / Metatranscriptome231Y
F025484Metagenome / Metatranscriptome201Y

Sequences

Protein IDFamilyRBSSequence
Ga0208619_1006973F019092GGAMSNVPLLGERKSENEPMFRLLYCLVCGTLEELPPYDGPVELDHLLAVACEVHVFPSGEPHKGKLFVLPLRVWASTESKREIIRQIKGGGSAGLAEFDDSFYDSRSTFMEGAMECYSKHNKPKEGCLDWHAKDRLLIPKTQKERKAEGMGSYLDAPGPKTYLCDFCPVAVGVAQRKRKLMG
Ga0208619_1006975F005167AGAAGMAVNSSRSMNRSLDEGATDGKYRKARPNTEVIPGQGHEETMRNRESLHPFSGYGFITSEMPNKVNPGK
Ga0208619_1006977F025484N/ALMFDGDGAETMELQAKKVMQNAMHYRGSAPCPTCGVIMNPVEFMYNQGKCLNCLSQAKASRIKGKMA
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Institute for Fundamental Biomedical Research
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