Scaffold Ga0209431_10031405

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0209431_10031405

Scaffold Ga0209431_10031405

Overview

Basic Information
Taxon OID	3300025313 Open in IMG/M
Scaffold ID	Ga0209431_10031405 Open in IMG/M
Source Dataset Name	Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 13_3 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	4102
Total Scaffold Genes	10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	8 (80.00%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division NC10	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Unclassified → Soil → Soil Microbial Communities From Rifle, Colorado, Usa

Source Dataset Sampling Location
Location Name	Rifle, Colorado, United States
Coordinates	Lat. (^o)	39.534762	Long. (^o)	-107.782602	Alt. (m)		Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F049983	Metagenome / Metatranscriptome	146	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209431_100314052	F049983	AGGAGG	VDSEDKQSDLSSPTPKAPYQRPELKRVGKLRDVTAQKTGIRPPGDTGDQ
Ga0209431_100314053	F049983	AGGAGG	MDSKDKQPELSSPNPKVPYQRPELKRVGTLRDVTAQKTGTDQM
Ga0209431_100314054	F049983	AGGAGG	MDPKDKQPELSSLSPKAPYQRPELKRIGTLRDVTAQKTGNDLASD
Ga0209431_100314056	F049983	AGGAGG	MKPQDTQADIADPKPKAPYQRPELKRIGTLRDVTAQKTLIGPEQ

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.