| Basic Information | |
|---|---|
| Taxon OID | 3300025313 Open in IMG/M |
| Scaffold ID | Ga0209431_10012734 Open in IMG/M |
| Source Dataset Name | Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 13_3 (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 6471 |
| Total Scaffold Genes | 9 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 7 (77.78%) |
| Novel Protein Genes | 2 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (100.00%) |
| Associated Families | 2 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Loam → Unclassified → Soil → Soil Microbial Communities From Rifle, Colorado, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Rifle, Colorado, United States | |||||||
| Coordinates | Lat. (o) | 39.534762 | Long. (o) | -107.782602 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F005116 | Metagenome | 411 | Y |
| F010458 | Metagenome / Metatranscriptome | 303 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209431_100127347 | F010458 | GGAG | MVNSNDNFIRPAKHGSQVVLDPEFLLRHALYMSDGETIIRSSMTLGQAIEAIAFAHIKVKRPELADKCNAAKIEFKDGKFVVSFADSTDNLSF |
| Ga0209431_100127348 | F005116 | GAG | MSVFTWRFNTIPDPKAIEHFIDAQMLLFSRNAKHLTGADGEPVVDIMKVEHNCGVVNLEFELNGVEGRSGDVFCFPGYFAGDMDRQGNPLFNHCDTEGYLYGTVVRLILDRAQKVFDMEIMSW |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |