| Basic Information | |
|---|---|
| Taxon OID | 3300025310 Open in IMG/M |
| Scaffold ID | Ga0209172_10000776 Open in IMG/M |
| Source Dataset Name | Hot spring sediment bacterial and archeal communities from British Columbia, Canada, to study Microbial Dark Matter (Phase II) - Larsen N4 metaG (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 81179 |
| Total Scaffold Genes | 68 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 54 (79.41%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: IMG/M) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Thermal Springs → Sediment → Unclassified → Hot Spring Sediment → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii) |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Canada: British Columbia | |||||||
| Coordinates | Lat. (o) | 60.1987 | Long. (o) | -125.5127 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F012236 | Metagenome / Metatranscriptome | 282 | Y |
| F042963 | Metagenome / Metatranscriptome | 157 | Y |
| F054431 | Metagenome / Metatranscriptome | 140 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209172_1000077646 | F054431 | AGG | VKTEASGTLHIVASSDAPAVTNAPARRLTLARRHIETAIAHINDVAQSRIPLSTDAERAPGVEELRLIVRALADIREALRQSDTSTPLDNRN |
| Ga0209172_1000077647 | F012236 | GGA | MASVDRAVVRMFISEPDTVRWETRITDGRGLELKVFGPGNARRTQAFPDVLSLVDYQVQYEQQLLANGYTVLPLGERRSGYDRRQQGRTTQDRRRQ |
| Ga0209172_1000077652 | F042963 | GGAGG | LKDPVVRMFTSDNGTVRWTTMAGAKGLEFSVCGPDGWRNSSYFTDPHALVRFQAEYERFLRDSGYLVSLVSERRWRPDRRAVSRPGSDRRRPA |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |