| Basic Information | |
|---|---|
| Taxon OID | 3300025310 Open in IMG/M |
| Scaffold ID | Ga0209172_10000242 Open in IMG/M |
| Source Dataset Name | Hot spring sediment bacterial and archeal communities from British Columbia, Canada, to study Microbial Dark Matter (Phase II) - Larsen N4 metaG (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 159968 |
| Total Scaffold Genes | 135 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 102 (75.56%) |
| Novel Protein Genes | 2 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (100.00%) |
| Associated Families | 2 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: IMG/M) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Thermal Springs → Sediment → Unclassified → Hot Spring Sediment → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii) |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Canada: British Columbia | |||||||
| Coordinates | Lat. (o) | 60.1987 | Long. (o) | -125.5127 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F022831 | Metagenome | 212 | Y |
| F047160 | Metagenome | 150 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209172_10000242103 | F022831 | AGG | VEVCRCGAERRRLEALGYRFDAPPIPAAASPASRPVVYAAPGLAGLLVGYRSDAHISRAWRIVLALLFLIVVGAAGYGMVTYTHLPLPPTRANTEIIVTLEEHTREAGGGGNAIPAFIRLPGTIGVLEPTMTADDLLKPLSEADLSKGFCSTSIARQIRYEFPGFYESWPDERLERVVLQKYPELEDRLCVLPSQLGISPDDVVKYRLRPRTVVEWTMLWARTALVTMLVAVALLNVYYRLLVNRLPVTSA |
| Ga0209172_10000242115 | F047160 | GGAG | VLLFEFFPLFVTIVGLVAVIILFRKDRRARANNEPEEPIARRREPSPDDDEGGPGLRPSMRA |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |