| Basic Information | |
|---|---|
| Taxon OID | 3300025286 Open in IMG/M |
| Scaffold ID | Ga0208315_1019153 Open in IMG/M |
| Source Dataset Name | Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_215 (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 2168 |
| Total Scaffold Genes | 9 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 7 (77.78%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Mediterranean Sea | |||||||
| Coordinates | Lat. (o) | 38.09 | Long. (o) | 11.46 | Alt. (m) | Depth (m) | 1200 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001086 | Metagenome / Metatranscriptome | 782 | Y |
| F019662 | Metagenome | 228 | Y |
| F105930 | Metagenome | 100 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0208315_10191532 | F105930 | AGAAGG | MKKYTVTIPEMEFDVEAEDENDAEYQAIGLFDWGNVDMEVEEKEIK |
| Ga0208315_10191537 | F001086 | AGGAG | MADKCTGWAIVATMERPDGTWYDETITEIDDDTASAVDSFLTEYCEEKNKEKKND |
| Ga0208315_10191538 | F019662 | N/A | MTDKEREDFEWASGFYLYDDLDQKWINWSEKKLFKEIEKLAWQPFEHWDGDKIYIEIEKLASSVREKIKKEIGNGRSQISRTKK |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |