| Basic Information | |
|---|---|
| Taxon OID | 3300025276 Open in IMG/M |
| Scaffold ID | Ga0208814_1050163 Open in IMG/M |
| Source Dataset Name | Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG Antarct_55 (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 1222 |
| Total Scaffold Genes | 4 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | South Georgia Island | |||||||
| Coordinates | Lat. (o) | -50.35 | Long. (o) | -39.82 | Alt. (m) | Depth (m) | 4 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F030251 | Metagenome | 186 | N |
| F046022 | Metagenome | 152 | N |
| F092744 | Metagenome | 107 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0208814_10501632 | F092744 | AGGA | MSTFTTIETFTAKNHPTISVELSRLTNRKGENLYIVSFLDAMHSQEVTLGRYHSLTEASKGFDLHKKAAQWGELYA |
| Ga0208814_10501633 | F046022 | AGG | MKINQQIITARALHTLQSQPVPQRAVDPIDKTAKNLIWKQIFDVQLKGESDE |
| Ga0208814_10501634 | F030251 | GGA | MVMFSTDSFPPIKMVTFPALQREISLVKRTPFIGTPIWLVFERNGQAEPQQVAWFENFNFACACFDDRTKAADNEN |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |