| Basic Information | |
|---|---|
| Taxon OID | 3300025276 Open in IMG/M |
| Scaffold ID | Ga0208814_1009563 Open in IMG/M |
| Source Dataset Name | Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG Antarct_55 (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 3526 |
| Total Scaffold Genes | 10 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 7 (70.00%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Proteobacteria | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | South Georgia Island | |||||||
| Coordinates | Lat. (o) | -50.35 | Long. (o) | -39.82 | Alt. (m) | Depth (m) | 4 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F016738 | Metagenome / Metatranscriptome | 245 | Y |
| F059366 | Metagenome / Metatranscriptome | 134 | N |
| F076518 | Metagenome | 118 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0208814_10095634 | F059366 | AGGA | MISGLDSVKTKVLENAVFSSILAGSRRVSEKNRQIAINNELKLLQHHRELGHQTPLETERSLETERLLKREHRRWNLTKGYYAISEGVEL |
| Ga0208814_10095635 | F016738 | AGGGGG | LKDYLAEPKPVSPYKELINDYQGSVTKAAHGESGGLCHIYKSQLNPTARKKYNKRKVA |
| Ga0208814_10095637 | F076518 | N/A | MTLDHDQCVDVIKKYNAHIPAWSIAATMGITRNDIRAIRYCKKNHLPLTDYKFALSDPEYKFGPLSERPCAWDLRLSMKLARLPMSKWAEAI |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |