Scaffold Ga0208814_1004553

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0208814_1004553

Scaffold Ga0208814_1004553

Overview

Basic Information
Taxon OID	3300025276 Open in IMG/M
Scaffold ID	Ga0208814_1004553 Open in IMG/M
Source Dataset Name	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG Antarct_55 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	5491
Total Scaffold Genes	9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (66.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location Name	South Georgia Island
Coordinates	Lat. (^o)	-50.35	Long. (^o)	-39.82	Alt. (m)		Depth (m)	4
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F019392	Metagenome / Metatranscriptome	230	N
F055204	Metagenome	139	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208814_10045532	F055204	GGA	MEGAAQAYAQLSEQEKEMIREVVDSPLMGILAKVFGEEFVQALGSFNKPARKMDAEMRSQAARMLMR
Ga0208814_10045537	F019392	GGAGG	MSVVPQFYEREFNGQMRDFVRITIKGMKDVFEAPVRPQDLTRFPDEWQSYKKTKGTKKITGMSLKELPAMSEDRRIELELFGVESIEQLAEADVDKLRNLGQAFVELQRIAELTVKAKTSPKKVHKPLTIGIPDEPIDNLPERS

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