Scaffold Ga0208814

Basic Information
Taxon OID	3300025276 Open in IMG/M
Scaffold ID	Ga0208814_1003046 Open in IMG/M
Source Dataset Name	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG Antarct_55 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300025276 Open in IMG/M

Scaffold ID

Ga0208814_1003046 Open in IMG/M

Source Dataset Name

Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG Antarct_55 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	6999
Total Scaffold Genes	12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	10 (83.33%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

6999

Total Scaffold Genes

12 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

10 (83.33%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Xanthomarina → Xanthomarina gelatinilytica	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Xanthomarina → Xanthomarina gelatinilytica

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location Name	South Georgia Island
Coordinates	Lat. (^o)	-50.35	Long. (^o)	-39.82	Alt. (m)	Depth (m)	4
Location on Map

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Source Dataset Sampling Location

Location Name

South Georgia Island

Coordinates

Lat. (^o)

-50.35

Long. (^o)

-39.82

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F042021	Metagenome	159	Y
F043087	Metagenome	157	N
F097668	Metagenome	104	N

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0208814_100304610	F097668	AGGAG	LIDYRICEIDIEKSTTALHLEKTYSCEWGFDQNSNIDPFVVLRACITKPVTFPVGKMIPIPTGIYPQIKNPNFGIDVRSFSELVYEQGIALADGLSTFEYTFRNEMWLLLQNNSKQVQTLQPTQKVATFSVSHRPRMVINYVDQIEDSDFKNSSAKSYIQKIKKKISPETYDLKHGKPPLEDINYSRETIEKYKKGGIGTHGLDSYVTDVKLMQEEEIEEPTGVKPSES
Ga0208814_10030467	F042021	GGA	MDIEDIKKQEELWKDVILKGEMLTIKLITEEAKKELEERIASFLITRKEAIASNKISFLFRDREYTMDTDNVDIAIKTWANTKNIGLHRALLAYRKAETNAWIYKTLLDKKKTGMFKVCNKLILIGSGIYPYSMFDIHKKYKHIQQIGIEINNNRAAIGRDLVNKSPARDHIKIITCDGCNYNYEDLDEDDLVFVSCDVDNKKIMNRVIETSKAHIFICAPYEKTWLRALVQNVKVSKSSSGITSYTD
Ga0208814_10030468	F043087	AGGA	MSVGFLTQYYRGLGHSQRIKFIAEKTAEYTDVVIMDQLFRPPIEYSVPHIAFLGDYTLPDINKVFQFIQQPSMINFRIRQFIETIEKHNVKVLVCEGFPFCRQQFAHEYFRYLEECKKRNIKIVISVRDFPWDEPHNNQLQDWVLYTQNTVCKYYAEYILVHGDKKLLPLVSDRTKQANSVQIIKDIEHLVKYTGYVCDEDQPIHNQRDNNIYVSTGLNKDEAVLIFKKIAEIAHHYPNYNFIMPIANKYNSMGGRRNKNIYLVEYVPELRKKLTTCAAYITYGGYNATVEILKGQIPSILVPRQSGKKMEQFIRAFTFEPYDFYKVLTLQEFNNIKTVLDEILDGYKPQPFEFNLKGASNTAKFLSEMHNGY

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0208814_1003046

Overview

Ecosystem & Geography

Associated Families

Sequences