NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208814_1000838

Scaffold Ga0208814_1000838


Overview

Basic Information
Taxon OID3300025276 Open in IMG/M
Scaffold IDGa0208814_1000838 Open in IMG/M
Source Dataset NameMarine viral communities from the Global Malaspina Expedition - Malaspina viral metaG Antarct_55 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)16247
Total Scaffold Genes27 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)19 (70.37%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location NameSouth Georgia Island
CoordinatesLat. (o)-50.35Long. (o)-39.82Alt. (m)Depth (m)4
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018271Metagenome236Y
F019395Metagenome230N
F053569Metagenome / Metatranscriptome141N
F071661Metagenome122N

Sequences

Protein IDFamilyRBSSequence
Ga0208814_100083810F019395N/AMWSTIGEVYPVFMPAPTGQTIVAEPQTSQREVTERYSVAKVTGVVAYENPRFISTLHWVAKCS
Ga0208814_100083818F071661AGGAMNNKLQVIVPVPMSMLADADIVEEINRRQMLVKWVRKPIPKTSNLGRSFVSISCVVEELDCRG
Ga0208814_100083821F053569GGAMNVDIYLEALSDFHKLWEYQNPYCEKLNFDKHLAYKEAALKIVDEIKRGDA
Ga0208814_100083822F018271GGAGMNSLNTYCHVTEQVNAYTDDYDAPVDGVFNECSPLADIYQSLMLDREVTFQAGWNNQPTIYTAFDILLDRINENGSATDQAASIFAAALFNESKGQAATDLAQDCDFMQWVYDFFDYLQNEKPAPFGMYLDFLTIRGEA
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