NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208814_1000420

Scaffold Ga0208814_1000420


Overview

Basic Information
Taxon OID3300025276 Open in IMG/M
Scaffold IDGa0208814_1000420 Open in IMG/M
Source Dataset NameMarine viral communities from the Global Malaspina Expedition - Malaspina viral metaG Antarct_55 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)27438
Total Scaffold Genes48 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (4.17%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families6

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location NameSouth Georgia Island
CoordinatesLat. (o)-50.35Long. (o)-39.82Alt. (m)Depth (m)4
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001913Metagenome / Metatranscriptome618Y
F006002Metagenome / Metatranscriptome384Y
F011526Metagenome / Metatranscriptome290Y
F013571Metagenome / Metatranscriptome270Y
F030762Metagenome / Metatranscriptome184Y
F063092Metagenome / Metatranscriptome130Y

Sequences

Protein IDFamilyRBSSequence
Ga0208814_10004202F030762N/AMQDLKLAFINSLTLTVSFSNAEQWLKLTLLVVSIAYTVLKIFNLKKKSE
Ga0208814_100042026F063092N/AMVEDKIIWQGVKERITSKMSNQDFKTMCRLHAKYFNHKYSEPCTCNKNRLRQWIEQLNNKLL
Ga0208814_100042030F011526N/AMDNLQMIATVECFIHHKTGKEIRITKPNKPNHYLLLVKAFENCKGFFIKI
Ga0208814_100042036F001913N/AMIENILELLKNTDCKSEIVQLAKGKNKFPESFKEVFTRQKQDLEWKR
Ga0208814_100042039F006002N/AMRAVYCKCKNTYSIQCNNNTDKNCKTPEYWKQGIGSIHKAEE
Ga0208814_10004204F013571N/AVYLEYFKQDQIMEINLILLMPNAMMLGCQYHEPEKGFEYSEVNFFLFFGQIQVRWE
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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