NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208814_1000419

Scaffold Ga0208814_1000419


Overview

Basic Information
Taxon OID3300025276 Open in IMG/M
Scaffold IDGa0208814_1000419 Open in IMG/M
Source Dataset NameMarine viral communities from the Global Malaspina Expedition - Malaspina viral metaG Antarct_55 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)27466
Total Scaffold Genes55 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (3.64%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location NameSouth Georgia Island
CoordinatesLat. (o)-50.35Long. (o)-39.82Alt. (m)Depth (m)4
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002629Metagenome / Metatranscriptome542Y
F006815Metagenome / Metatranscriptome364Y
F011006Metagenome / Metatranscriptome296Y
F054158Metagenome / Metatranscriptome140N

Sequences

Protein IDFamilyRBSSequence
Ga0208814_100041921F002629N/AMEVNKAAWEKLKKQIEYHTTQDSEITDVQINYQVKETKNKNYLKLNITIDKWDKITG
Ga0208814_100041931F054158N/AMKKIKKPLNDKIKFIPCNENRLIHSYTRTDKKSTRFEKLNK
Ga0208814_100041934F006815N/AMVNNFSQETAQTKFDEYTFRIEALCNKIEELKAKIEVSQLYKQ
Ga0208814_10004199F011006N/AMKKLINKYLVKKSIRPYKLVPLSTGVIIEHYRNGKLKTENYV
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