NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208814_1000395

Scaffold Ga0208814_1000395


Overview

Basic Information
Taxon OID3300025276 Open in IMG/M
Scaffold IDGa0208814_1000395 Open in IMG/M
Source Dataset NameMarine viral communities from the Global Malaspina Expedition - Malaspina viral metaG Antarct_55 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)28838
Total Scaffold Genes57 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (15.79%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location NameSouth Georgia Island
CoordinatesLat. (o)-50.35Long. (o)-39.82Alt. (m)Depth (m)4
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000898Metagenome / Metatranscriptome845Y
F036311Metagenome / Metatranscriptome170N
F076259Metagenome118Y
F077318Metagenome117Y

Sequences

Protein IDFamilyRBSSequence
Ga0208814_100039511F077318N/AMIAEIIKILQSGDYYGAGEYTEIAKGKREMVSTWKGFNRKIKRLWLLKR
Ga0208814_10003952F036311N/AMAFKIYQDTVTKELVINNGIEYRYPAFSEIQRQKYGDFLILKTVSGVSLLDKTIYSDLQNEAGTAYASFAALKTALDGYFDSII
Ga0208814_100039536F076259N/AMTQFEKIGYFIEYMIDTKYIGSISIDKPDRKEVGYYGRIDSVANKDILLDNKKRIKKGQSYYTRMYPLCGNYINK
Ga0208814_100039557F000898N/AYKDMNIYKTNFPTEQEGFDYLVSQNVWQEVTEEGVTSMQYINGTQAVVNIGKVVEIPATYDPEGHELTPAVYYDGWSYDIMSTDDALDFGEFEVFPASAAVHSFFGYPIADEVEEEE
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