| Basic Information | |
|---|---|
| Taxon OID | 3300025276 Open in IMG/M |
| Scaffold ID | Ga0208814_1000201 Open in IMG/M |
| Source Dataset Name | Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG Antarct_55 (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 42230 |
| Total Scaffold Genes | 43 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 40 (93.02%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (80.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | South Georgia Island | |||||||
| Coordinates | Lat. (o) | -50.35 | Long. (o) | -39.82 | Alt. (m) | Depth (m) | 4 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F004144 | Metagenome / Metatranscriptome | 451 | Y |
| F005433 | Metagenome / Metatranscriptome | 401 | Y |
| F022758 | Metagenome / Metatranscriptome | 213 | Y |
| F039830 | Metagenome / Metatranscriptome | 163 | Y |
| F089431 | Metagenome / Metatranscriptome | 109 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0208814_100020118 | F089431 | AGGA | MKEKTDKNYYSGEKIDDLVDAVKNSDYEHQEGNTQADTSYKDELYSNEQMSTHKTMDNIFKVDGVPSRWEHNKLHADWHFDPFADPHEETFVIPCRFEGDFAPAIKYAVEHSKEMTIGNYRNRNLSKQDKDLHDGEIQDVLNASGKEDISGMYHDMVVKAKFDKDGKNYYAGRNPAPEYEILLRMIDSLEVEVHQSRMHIQKLGQVTPIHIDQQMRYARPGWRKVWTEAGADKNPLKLRRFLVHLQDWDYGHVWQFGNTYHQGYKAGTCITYDWCNMPHGTANFGYTPRVTFQFTGFVSDKVQHMIDNPDPNRIIEV |
| Ga0208814_100020120 | F004144 | AGGA | MIRWFKESKHHLNVETGWGYFYHLWHSIKNSWSLIIIAFKSVVHGLFPFMWKADAPKGVIKMYHQIMRIQHIKDMDELRKKPKNERYKSTTTTE |
| Ga0208814_100020123 | F005433 | AGGAG | MSIRTRFEIETFVLGAHPTPARKAQILTTELMQAREQQHPDLPVLEAIMADFSAEHDVDALIANIEETEEEYWIARLAKLAAVDILTIGKVQPEHMNYMVALEDEAFSACVKSTTAIAKQLNYEVQQVEAELQSDLAQEK |
| Ga0208814_100020124 | F022758 | AGGAG | MALPATGSSISMGTVRNYFGLSGTVSLSTLGAFISPSVSTNIQLSATFGGWQNPNSTGAS |
| Ga0208814_100020131 | F039830 | N/A | MWSSPAELYPIHIAPDLAPEGQRPLVEPSTHKVNVEYLVVQPSREPYGIPQEYTRRLWIC |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |