| Basic Information | |
|---|---|
| Taxon OID | 3300025276 Open in IMG/M |
| Scaffold ID | Ga0208814_1000077 Open in IMG/M |
| Source Dataset Name | Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG Antarct_55 (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 76644 |
| Total Scaffold Genes | 112 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 93 (83.04%) |
| Novel Protein Genes | 7 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 6 (85.71%) |
| Associated Families | 7 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | South Georgia Island | |||||||
| Coordinates | Lat. (o) | -50.35 | Long. (o) | -39.82 | Alt. (m) | Depth (m) | 4 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F009293 | Metagenome / Metatranscriptome | 320 | Y |
| F049949 | Metagenome / Metatranscriptome | 146 | N |
| F058462 | Metagenome / Metatranscriptome | 135 | Y |
| F068147 | Metagenome / Metatranscriptome | 125 | N |
| F090892 | Metagenome / Metatranscriptome | 108 | Y |
| F090893 | Metagenome / Metatranscriptome | 108 | N |
| F092747 | Metagenome / Metatranscriptome | 107 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0208814_100007713 | F009293 | AGGA | MTRIAKDITAGKDFIVHVFDASEVDVNDNYRLYEAFESGWPVVIKNYKIEGLDYDYYDNLPDWNITDNKWVMPWYNSHIKARDRLRNERDWSEDEIDLFHKKHKQSNKAWTDSFDNMFPQYNTTEKMLSHRYNTLVENKLHLDELDEQHTGNEQQMRMFVQLDKKRPRVLSFGPDLEKMYNDYKDEFNLGEIDKSNTHKFITEMRDRCVWNDKAWDQFHHPLHYITFDPGDIWFFNAQWITHQIVFGTKLQCFECDIQNDSLLHPEWAMKQRIQTLDNNDNSAWGGTTVSME |
| Ga0208814_100007722 | F090893 | AGGA | MAIERKDRSFDLIFDQVSMDHVPAEYIREIMVDLGTGERITLTKDDLLLIKNKSADDIISALSVDNMSNISLKLDYEAIKSDVLRGVTGFLGKHFDE |
| Ga0208814_100007725 | F049949 | GAGG | METKTKNKIRVVNNGGSLSETDLTLIAGTDLVMQMMRNRIVVVTNNNDIDWTTLMDDIPGLYHIRPLDKSKQIYQLWFEFQSDIDQFNKNLYVSKLSNTAHEAA |
| Ga0208814_100007727 | F090892 | N/A | MNILDVMVDSYLTPKLEEGETVNLSLYNPRQRTNIRLYGLKCKDWTPLDIFDYKHKWLAEEHEELRIDPDRLTQAAKWCKTNLFHQDFTINKFASPDDSHMILFKNSAEAMLFRLSING |
| Ga0208814_10000775 | F068147 | GAGG | MKKGEKDWDYQFVSDCEIVNVFIPKNTHLSGHEELKQKLLLLQQVECDNHLTSSIVNLYNTSSIEWIEHVRKMGHKYVAFWFDGCWPKSDGIEKKILTYINRLEKKDWVTAVHPKYLDSLMLLNIDEFIAWPAKAPNFGTYAFWAENWISDCTVELSKTIERNIVVGAPQSDPQNFLNGLMDKKYTDHTISRGARVIIKRKNIPSSPIYFVNTERSSPTVADAIKHTVFKQYVGAVAGFKLLYYAYTYGIDIDSTKFVWYDFDANSVQFKRDTIKNWDGNDYPTWVKEWVHAHPEANAELLKHVDKEWLNIVKQFGGKQQWLDFWVQVQMCEHEFLTVDLVNNHKEITDRLVNGASTFFWSSNIYSYVLLKVISKPFTLERSFAELITRLQQIETCWFSGTDPNDNDLTCDVKWILGYSTNDSIGTGI |
| Ga0208814_100007766 | F092747 | AGGA | MSTNNNDKSASVNFFKLTGYYNINDIKYDLLKIIAPYDGYMYNEKETEKLLGVFESYLGDLKRSFKIFSFVIENTEKENAITFDIQIKMQKDRSPKKLKIHVGKLWVEVKPKVEPTDA |
| Ga0208814_10000778 | F058462 | AGG | MSDKPINITTSRSNDFPIRANYMFDNIGPGNCEDIIWQNVVDTVGEIEQNEIGVGVTQSYQYTKLHDKPIILTKWQGMKTANGPEFRIGLGKGIPGSKQTPPIMSGNFKTGVQVNSTLSIQSVKLGSRQGKFCIQTDGKWYAIQIGDQVE |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |