NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207666_1015091

Scaffold Ga0207666_1015091


Overview

Basic Information
Taxon OID3300025271 Open in IMG/M
Scaffold IDGa0207666_1015091 Open in IMG/M
Source Dataset NameSwitchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with spike-in - S5 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1097
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameKellogg Biological Station, Michigan, USA
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015747Metagenome252Y
F036726Metagenome169N
F061606Metagenome131N

Sequences

Protein IDFamilyRBSSequence
Ga0207666_10150911F015747N/AMDNNSQVTGLRALVANVMLERARELSDLQACEVWRLIQLIDTGASPKSVRPATLQLAMDFKRFPHARRV
Ga0207666_10150912F061606N/AMDQYPPVNESGLVTRENSLEKVLALSISQAHEIWHAMQLIAANGSLEGLPRPVVQIAMELNYFLNAWKVVAEKAVLHERLIGKPRRRGFWV
Ga0207666_10150913F036726GGAMELDANMSDTFVELIKTKNGLTDIHVATFEVHSRPSTFEDALEKAIKLSRAQAHEVWYALQLLVGHESLVGQPAAVVELAMQFNPFPVTWRVIADKALEYEHLAVKQKR
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