NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208179_1008098

Scaffold Ga0208179_1008098


Overview

Basic Information
Taxon OID3300025267 Open in IMG/M
Scaffold IDGa0208179_1008098 Open in IMG/M
Source Dataset NameMarine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_Geostar (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3640
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location NameMediterranean Sea
CoordinatesLat. (o)38.55Long. (o)13.18Alt. (m)Depth (m)3511
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007317Metagenome353Y
F017326Metagenome / Metatranscriptome241N
F043455Metagenome156Y

Sequences

Protein IDFamilyRBSSequence
Ga0208179_10080981F043455N/AMSMRKETVEEFLRRGKTITKIPHVLDTVGSIWNQQGYSADKERQEHRKFGIRTVDWKTMQPDIRFDTEDDDRKYWNQLNKKCDKLIKKIEKKQKKT
Ga0208179_10080982F017326GGAMNDYEKVKIEINESVTSDNFKEHLRKEYHNSFDEYESDTRHIDLDVFYEERSIPISELVPKGMTIKEYFGKEQRLLREENISYVKFD
Ga0208179_10080984F007317N/AMKQKKIVKEFKENGDGTSYLEFSSKELSMFGLEKGDSVEWMQLEDREVWKKLTKKKWSI
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