NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208179_1005889

Scaffold Ga0208179_1005889


Overview

Basic Information
Taxon OID3300025267 Open in IMG/M
Scaffold IDGa0208179_1005889 Open in IMG/M
Source Dataset NameMarine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_Geostar (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4587
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (54.55%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location NameMediterranean Sea
CoordinatesLat. (o)38.55Long. (o)13.18Alt. (m)Depth (m)3511
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018449Metagenome / Metatranscriptome235N
F080512Metagenome115N

Sequences

Protein IDFamilyRBSSequence
Ga0208179_10058892F018449N/AVLEYTLNLSPNALAPGKESKMNKLLIILLSFLLVSCASYKPVADLKVSKNANYYQEDRQHCRLLIKEEFNAFYAAWYDRELLSRCLNGRGHNVLNTYTIGN
Ga0208179_10058899F080512GGAGGMVNRCYNIQKYQAKLDYGDQFLNEQYSIAVVFLKTVNLTTAWQLGTELFTKLKAGSIIKTIMNRSVILQICRLVTYLNSKKTPRNILKIHHKKGQRYYLLYWIEHSVIIMVQVKYLSMNCSLCQQEFDKLYYLNSDCSHWDDHFYCKKCFRKLFKMLPEKVKLTFPGYKGKEKDVS
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