| Basic Information | |
|---|---|
| Taxon OID | 3300025251 Open in IMG/M |
| Scaffold ID | Ga0208182_1002304 Open in IMG/M |
| Source Dataset Name | Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_906 (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 7828 |
| Total Scaffold Genes | 17 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 9 (52.94%) |
| Novel Protein Genes | 7 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (57.14%) |
| Associated Families | 7 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Mediterranean Sea | |||||||
| Coordinates | Lat. (o) | 43.29 | Long. (o) | 8.1 | Alt. (m) | Depth (m) | 2535 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000704 | Metagenome | 928 | Y |
| F000730 | Metagenome / Metatranscriptome | 917 | Y |
| F001606 | Metagenome | 664 | N |
| F001712 | Metagenome / Metatranscriptome | 648 | Y |
| F003616 | Metagenome | 477 | Y |
| F004658 | Metagenome | 429 | Y |
| F049687 | Metagenome | 146 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0208182_100230412 | F004658 | N/A | MPEYLKKVYEFFKTNNAAKDVLIGSVSFIAGGFVLDRILRRDDDEEDQ |
| Ga0208182_100230415 | F003616 | GAGG | LIWSEKLGHEIGTHDSLGGMKILPKPFIHSTLNTIVTCRICKGTGLNAITHESGLVTLNPCVLCKGVKRRSNKI |
| Ga0208182_100230417 | F049687 | N/A | KTITQSAAGQAVQAQFKQAVSSAVASVGIDFGVPTVKTTVQETPTEIITITEKPEVIEEVIEEPVIEEQIIEEPIIEFPELIPEVFAEEQIVLADDIIQILNDIENGVILVPTWFRNNIEWVKNGHITQQEFRTAYNYLVDTQIVHAPEIDTPPLVGTGITDNMVTQQVINFNIINGRAVGSIKFQATNNFNPYYYNKNIVNIIQIKDPSGVVLLTKENRLNFTETERDEVINYDEDVKQNTRATIESFVWSSATAPTPFSKKFTIEISDGEEPAKPLTSGFMGAGVAGAIAGLILIGFIADHKRGK |
| Ga0208182_10023043 | F000730 | N/A | MVFTNIQKIGCLILVNEFIPPEIIPLVWFSCISVTVYVFFRVFSSTLREKFKQTNLSRRQAEKGGNTDGQIDDLITNAPRILHEIDKQIAEMKSQGVSDDQMKGLYQKKQLLSLVADNQEVINIIGKPIIKKLLGFVKAI |
| Ga0208182_10023044 | F000704 | AGGTGG | MPHVDTRSEPSSVKSVSVYNVGDYGMDLFLPFTDVGLTETSITFSTATVTRDLEDSNQPMDDFPAVYSDTDTNVLLNEGNDTAFSQTYSYNPDMTAIIYAIHLSFPAAVICSAFTSGTLNVGALHLKITERSTNDRLLYENTFQSGAANLTGTGTSLHFFQRDVVETILVRKGNPIDILVELVTVKTGTNTRQEGIVPLAPYIKTAVLKRFTPAGIALHLHADLSHADGVYKYTKNRVSNLGQ |
| Ga0208182_10023045 | F001606 | GAGG | MTYGYDDVTFTSTSASSTAEVQLNSGTSLSAPDPAHAFNAVVPYQMELGAFTVDESLLTAFRIQSDDVAVEPKKFVLPNINTGDAAFTSVAAPALLAYPINTPLAGGEHLNFYAQPLTQNTAAAGVGATVLYDTESTNGVEQYYTRPTNETAGATAINTRTQGGDMTIQGGNEITGLYTVVSGAVATASQHDVGYSEFISPDFNTSMPYRIAVQPTATGLGSAANAITGGGGIMEYKMPRGKGIPLANNVTITNYYTNRDARTGASNFINFVRYSKN |
| Ga0208182_10023046 | F001712 | AGG | MASSAGQPIATRAQGFVNSLVGRISGYNPFPAATGGAVPQTISIDGMFNKWSGIGLGAWLYGMLPVKQLPQKSKAKTLGKSLLTGGVLGGLFSTGNPHNTNLISSSPALTVSSSEVSYT |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |