| Basic Information | |
|---|---|
| Taxon OID | 3300025248 Open in IMG/M |
| Scaffold ID | Ga0207904_1049587 Open in IMG/M |
| Source Dataset Name | Marine viral communities from the Deep Pacific Ocean - MSP-118 (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 715 |
| Total Scaffold Genes | 3 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Pacific Ocean | |||||||
| Coordinates | Lat. (o) | 11.9811 | Long. (o) | -108.0335 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F054918 | Metagenome | 139 | Y |
| F057670 | Metagenome | 136 | N |
| F090609 | Metagenome | 108 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0207904_10495871 | F057670 | N/A | TIENSQPQSRVRYRISINRLAKGQMQFECTTELDGPVELIGATHDQVPSSIALGKIQAAILLASDQLVAELQSRYPMGVE |
| Ga0207904_10495872 | F090609 | GGGGG | MSTATSLLLYRRLLDGLLNRLDESEPPSSQYTEGSDRPQWLRVTDYEWLVETLKELSEADPGFRQILAELKPRQCEGCSLTFTPHRPEQIYHDAYCRARANTRKTYYRQKGEKDANRLGTTEGSDE |
| Ga0207904_10495873 | F054918 | AGAAGG | MPIDWEQLKGPMNDLALEHICRRCKRIIPGRDYRIAGEGGNYHI |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |