NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209337_1031734

Scaffold Ga0209337_1031734


Overview

Basic Information
Taxon OID3300025168 Open in IMG/M
Scaffold IDGa0209337_1031734 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - LP-53 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2921
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (77.78%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → unclassified viruses → Circular genetic element sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)49.5666Long. (o)-138.6666Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004537Metagenome / Metatranscriptome434Y
F005848Metagenome / Metatranscriptome388Y
F056893Metagenome137Y

Sequences

Protein IDFamilyRBSSequence
Ga0209337_10317342F005848AGGAGMALPVQRSYSSTIAALNAPVFMVDNQTGLTSFLTLTPNVLQDITNLIDPAATQVITYTLVKNGNATSVRAFSPSISASTAGRVPIGPVSMSSGSYQWSATQSAGVLFNGQILVRYGSPLN
Ga0209337_10317343F004537GGAGMPFSNNIVNNYQLNSGNTPLLYPVRILCQQGVTTNISFPDQYLGRCINLKISNNDGTNAASYDYNLNGVFANLPSSTFATVDNAVINYLTVIAGAAGSVLIEAQVLPAARSEAPIEVQV
Ga0209337_10317347F056893N/AMRKNTGETKVHKTLTMPISFYALVEQIRHKQGMDTAEDAIKACVMQTARKLGLEA
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Institute for Fundamental Biomedical Research
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